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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157886132_157891662_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
157886132 - 157891662
Intron Length:
5531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATTTA
5'SS Class:
major
3'SS Sequence:
TTTGTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAAGACGT
Flanking Amino Acid:
PTPTPQSLLPGQSYQAPGVG
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.4
33.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.8
0.76
0.7
82
30
Minor 5ss
42.7
-0.8
2.9
49.3
47
Minor BPS
42.6
-0.4
2.3
71.18
45.1

Associated Gene:

Gene:
TUBGCP3
Ensembl Gene ID:
ENSAPLG00000009382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009818
157852815 - 157893591
40777