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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157908477_157908776_F

Intron Information:

Intron Rank:
131555
Intron Class:
major
Intron Phase:
Intron Coordinates:
157908477 - 157908776
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAATTGA
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.2
61.3
40.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89.3
0.88
0.6
85
22.7
Minor 5ss
40.9
-1
2.9
49.4
46.9
Minor BPS
52.1
0.15
2.2
80.93
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027790
157907216 - 157912817
5602