About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157908849_157912806_F

Intron Information:

Intron Rank:
131556
Intron Class:
major
Intron Phase:
Intron Coordinates:
157908849 - 157912806
Intron Length:
3958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
AGATAATCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
80.8
33.7
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
83.3
0.75
0.7
77.4
31.3
Minor 5ss
42.6
-0.8
3
57.9
46.3
Minor BPS
45
-0.4
1.9
53.69
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027790
157907216 - 157912817
5602