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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157937338_157995010_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157937338 - 157995010
Intron Length:
57673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTCCTCCCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
ACAAAGTGAACT
Flanking Amino Acid:
SLLRTLVSRYCAGEENWVDS
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.3
69.3
35.8
Major BPS
57
0.17
0.9
65
30.8
Major PPT
74.2
0.54
0.7
69.2
24.8
Minor 5ss
29.9
-2.3
3.1
35.2
33.9
Minor BPS
42.5
-0.4
2.2
58.25
43.9

Associated Gene:

Gene:
ATP11A
Ensembl Gene ID:
ENSAPLG00000008836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009238
157937299 - 158051908
114610
ENSAPLT00000042167
157937299 - 158054733
117435
ENSAPLT00000039604
157937299 - 158056885
119587