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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15796979_15798319_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15796979 - 15798319
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTATTAACA
Flanking Amino Acid:
HPPFDPLLHGTLIKPGSKPP
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.2
80.2
30.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.1
0.63
1
74.2
39.4
Minor 5ss
40.9
-1
2.8
48.3
41.3
Minor BPS
71.5
0.67
1.5
80.13
35.7

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865