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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15798661_15799408_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15798661 - 15799408
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
CTAAGGCTAACT
Flanking Amino Acid:
VSEGHTSSSSDNASENSSMQ
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
91.5
0.93
0.6
89.8
18.5
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
40.8
-0.6
2.5
62.09
47.2

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865