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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_157995134_158009264_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
157995134 - 158009264
Intron Length:
14131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTAA
5'SS Class:
major
3'SS Sequence:
CATTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TCTCTCACAAAC
Flanking Amino Acid:
FPDNRIVSSKYTFWNFIPKN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.4
35
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
83.5
0.75
0.9
80.5
36.7
Minor 5ss
42.2
-0.9
3.1
55.3
48.9
Minor BPS
45.7
-0.3
1.9
58.26
40

Associated Gene:

Gene:
ATP11A
Ensembl Gene ID:
ENSAPLG00000008836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009238
157937299 - 158051908
114610
ENSAPLT00000042167
157937299 - 158054733
117435
ENSAPLT00000039604
157937299 - 158056885
119587