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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15799589_15823216_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15799589 - 15823216
Intron Length:
23628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTTCTTAGTT
Flanking Amino Acid:
QLLAGPNTNLEELRKLSWSG
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
80
0.75
1
78.6
31
Major PPT
80.3
0.68
0.8
77.9
29.4
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
71.7
0.76
1.5
85.91
34.3

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865