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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158010449_158013666_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158010449 - 158013666
Intron Length:
3218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCCATTTCACT
Flanking Amino Acid:
FVITVTAIKQGYEDWLRHKA
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
73.5
0.53
0.9
65.1
40.9
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
51.4
0.12
2
73.99
42.9

Associated Gene:

Gene:
ATP11A
Ensembl Gene ID:
ENSAPLG00000008836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042167
157937299 - 158054733
117435
ENSAPLT00000039604
157937299 - 158056885
119587
ENSAPLT00000009238
157937299 - 158051908
114610