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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158032898_158033134_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158032898 - 158033134
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTGTTTTGAATT
Flanking Amino Acid:
RMSVIVKSSTGDIFLFCKGA
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.7
40.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.5
0.62
0.8
69.7
36.7
Minor 5ss
34.1
-1.8
3.5
47.2
48.2
Minor BPS
59.3
0.37
1.4
71.5
40.5

Associated Gene:

Gene:
ATP11A
Ensembl Gene ID:
ENSAPLG00000008836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042167
157937299 - 158054733
117435
ENSAPLT00000039604
157937299 - 158056885
119587
ENSAPLT00000009238
157937299 - 158051908
114610