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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158035577_158038103_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158035577 - 158038103
Intron Length:
2527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCCTGAACA
Flanking Amino Acid:
SGSLTSDSLSGLSTDMQDYG
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.3
0.46
1
66.2
39.3
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
80.5
0.95
1.3
86.14
31.9

Associated Gene:

Gene:
ATP11A
Ensembl Gene ID:
ENSAPLG00000008836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042167
157937299 - 158054733
117435
ENSAPLT00000039604
157937299 - 158056885
119587
ENSAPLT00000009238
157937299 - 158051908
114610