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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158040476_158041142_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158040476 - 158041142
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTGATTTAATT
Flanking Amino Acid:
YQFFCGFSQQPLYDTAYLTL
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.8
77.2
30.4
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
56
0.27
1.6
68.98
42.6

Associated Gene:

Gene:
ATP11A
Ensembl Gene ID:
ENSAPLG00000008836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042167
157937299 - 158054733
117435
ENSAPLT00000039604
157937299 - 158056885
119587
ENSAPLT00000009238
157937299 - 158051908
114610