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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158048238_158050016_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158048238 - 158050016
Intron Length:
1779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAACC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTATTTAATC
Flanking Amino Acid:
VFSLLWGGIIWPFLNYQRMY
Intron Amino Acid Position:
1054

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66.9
36.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.6
0.78
0.8
78.9
34.4
Minor 5ss
41
-1
2.8
50.4
40.1
Minor BPS
68.7
0.57
1.4
74.77
36.3

Associated Gene:

Gene:
ATP11A
Ensembl Gene ID:
ENSAPLG00000008836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042167
157937299 - 158054733
117435
ENSAPLT00000039604
157937299 - 158056885
119587
ENSAPLT00000009238
157937299 - 158051908
114610