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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158050183_158056627_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158050183 - 158056627
Intron Length:
6445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTTCCTTTACA
Flanking Amino Acid:
LWPTATERIQNASRHCQDHI
Intron Amino Acid Position:
1110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
92.9
0.96
0.6
87.9
22.2
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
83.6
1.05
1.4
91.85
28.4

Associated Gene:

Gene:
ATP11A
Ensembl Gene ID:
ENSAPLG00000008836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039604
157937299 - 158056885
119587