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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158165085_158182242_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
158165085 - 158182242
Intron Length:
17158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCAAACTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTCCTCCAAACT
Flanking Amino Acid:
NVLTYLTSIPSLRDAGIGFI
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
58.6
0.19
0.9
55.7
32.8
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
46.6
-0.1
2
65.17
45.4

Associated Gene:

Gene:
MCF2L
Ensembl Gene ID:
ENSAPLG00000016231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030243
158121567 - 158219388
97822
ENSAPLT00000023340
158121567 - 158219320
97754
ENSAPLT00000016963
158097228 - 158219388
122161
ENSAPLT00000045274
158075308 - 158219388
144081