About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158192159_158192877_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158192159 - 158192877
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
THTEKKDKMKEDIRLAVEQG
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
MCF2L
Ensembl Gene ID:
ENSAPLG00000016231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023340
158121567 - 158219320
97754
ENSAPLT00000016963
158097228 - 158219388
122161
ENSAPLT00000045274
158075308 - 158219388
144081
ENSAPLT00000030243
158121567 - 158219388
97822