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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158196887_158197105_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158196887 - 158197105
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ACATTCTGAGCC
Flanking Amino Acid:
SLELHSLLEKSMKWCDEGIY
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
80.3
0.68
0.8
72.8
37.5
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
49.5
-0
1.7
58.28
40.4

Associated Gene:

Gene:
MCF2L
Ensembl Gene ID:
ENSAPLG00000016231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023340
158121567 - 158219320
97754
ENSAPLT00000016963
158097228 - 158219388
122161
ENSAPLT00000045274
158075308 - 158219388
144081
ENSAPLT00000030243
158121567 - 158219388
97822