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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158197298_158198167_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
158197298 - 158198167
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGAA
5'SS Class:
major
3'SS Sequence:
ATGGCAATGGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTTCCTATGG
Flanking Amino Acid:
YAQILNEDLKEHVQKVFQKQ
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
62.4
38.4
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
50.9
0.02
1.1
45.2
40.9
Minor 5ss
34.2
-1.8
3.6
47
48.4
Minor BPS
47.5
-0.3
2.2
63.33
44.7

Associated Gene:

Gene:
MCF2L
Ensembl Gene ID:
ENSAPLG00000016231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045274
158075308 - 158219388
144081
ENSAPLT00000030243
158121567 - 158219388
97822
ENSAPLT00000023340
158121567 - 158219320
97754
ENSAPLT00000016963
158097228 - 158219388
122161