Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158198328_158198466_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

158198328 - 158198466

Intron Length:

139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTACGTGCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TGCTGTTTGATT

Flanking Amino Acid:

AFVKSPCTSPGLQRDYVSNS

Intron Amino Acid Position:

554

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

81.4

32.7

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

67.2

0.39

65.7

40.8

Minor 5ss

39.7

-1.2

2.9

51.2

45.7

Minor BPS

54.4

0.22

1.8

70.87

41.1

Associated Gene:

Gene:

MCF2L

Ensembl Gene ID:

ENSAPLG00000016231

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030243

158121567 - 158219388

97822

ENSAPLT00000023340

158121567 - 158219320

97754

ENSAPLT00000016963

158097228 - 158219388

122161

ENSAPLT00000045274

158075308 - 158219388

144081