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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158203922_158204824_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158203922 - 158204824
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTGCTCTAATA
Flanking Amino Acid:
NMEEIYHFHNRIFLRELENY
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
85.3
0.79
0.6
81.3
23.7
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
55.9
0.18
1.8
68.43
38.4

Associated Gene:

Gene:
MCF2L
Ensembl Gene ID:
ENSAPLG00000016231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030243
158121567 - 158219388
97822
ENSAPLT00000023340
158121567 - 158219320
97754
ENSAPLT00000016963
158097228 - 158219388
122161
ENSAPLT00000045274
158075308 - 158219388
144081