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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158206735_158206859_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158206735 - 158206859
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTTG
5'SS Class:
major
3'SS Sequence:
ACATTGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTGACATTGATT
Flanking Amino Acid:
RQFSDSVFFQECQRKLDHKL
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.5
40.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
70.1
0.45
1
62
42.6
Minor 5ss
48.1
-0.2
2.7
63.6
48.1
Minor BPS
52.8
0.17
1.7
68.67
42.6

Associated Gene:

Gene:
MCF2L
Ensembl Gene ID:
ENSAPLG00000016231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023340
158121567 - 158219320
97754
ENSAPLT00000016963
158097228 - 158219388
122161
ENSAPLT00000045274
158075308 - 158219388
144081
ENSAPLT00000030243
158121567 - 158219388
97822