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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158209974_158211720_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158209974 - 158211720
Intron Length:
1747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTGGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTT
Flanking Amino Acid:
NAREEVYIIQAPTPEVKATW
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.5
0.46
1.1
69.8
41.2
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
57.6
0.32
1.8
76.35
41

Associated Gene:

Gene:
MCF2L
Ensembl Gene ID:
ENSAPLG00000016231
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016963
158097228 - 158219388
122161
ENSAPLT00000045274
158075308 - 158219388
144081
ENSAPLT00000030243
158121567 - 158219388
97822
ENSAPLT00000023340
158121567 - 158219320
97754