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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158224539_158342035_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
158224539 - 158342035
Intron Length:
117497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
ACTGGGCATCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCCCAT
U12 Branch Point Sequence:
GTGCCCATGACG
Flanking Amino Acid:
FVTECHTFMQKIFRI*
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
57.1
0.18
1.4
66.4
42.2
Major PPT
59.2
0.21
1.1
47.4
44.7
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
51.6
-0
1.8
58.32
43

Associated Gene:

Gene:
GRTP1
Ensembl Gene ID:
ENSAPLG00000015320
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040888
158224521 - 158370756
146236