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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158226077_158228132_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158226077 - 158228132
Intron Length:
2056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCGC
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
TGTACGACAAAC
Flanking Amino Acid:
LLLIPLPLDAVFLKRKEANG
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.3
44.3
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
79.5
0.66
0.9
76.2
37.5
Minor 5ss
33.5
-1.9
3.1
44.8
43
Minor BPS
39.8
-0.7
2.4
55.07
42.1

Associated Gene:

Gene:
F7
Ensembl Gene ID:
ENSAPLG00000003743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003856
158226007 - 158234547
8541