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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158228294_158228845_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158228294 - 158228845
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCATCTTTAATC
Flanking Amino Acid:
REIYRDDERTKEFWHIYSDP
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
75.4
0.78
1.1
74.68
36.5

Associated Gene:

Gene:
F7
Ensembl Gene ID:
ENSAPLG00000003743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003856
158226007 - 158234547
8541