About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158230506_158233146_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158230506 - 158233146
Intron Length:
2641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTCCC
Flanking Amino Acid:
ASDGVSCIPQVKYPCGKILA
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
44.3
-0.4
3.6
73.48
37.9

Associated Gene:

Gene:
F7
Ensembl Gene ID:
ENSAPLG00000003743
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003856
158226007 - 158234547
8541