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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15823288_15828363_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15823288 - 15828363
Intron Length:
5076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTTTTTATTT
Flanking Amino Acid:
VRPIAWKLLSGYLPANVDRR
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.5
0.98
0.7
92.4
26.2
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
59.7
0.38
1.5
72.97
39.1

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865