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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158239506_158241059_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158239506 - 158241059
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGGATG
5'SS Class:
major
3'SS Sequence:
CACCTGCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
REAFEDQEKTEEFWNIYVDG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
66.7
44.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
65.1
0.34
0.9
58.1
32.8
Minor 5ss
38.8
-1.3
3.4
58.6
45.6
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002945
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003016
158237155 - 158248636
11482