About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158244757_158245562_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158244757 - 158245562
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAGT
5'SS Class:
major
3'SS Sequence:
ATTGTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCTTCTCTAATT
Flanking Amino Acid:
AEDGKHCVSSVQYPCGKVFV
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
69
41.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
83.5
0.75
0.8
76.8
36.8
Minor 5ss
33.5
-1.9
3.3
49.6
46.3
Minor BPS
68.7
0.67
1.6
84.17
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002945
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003016
158237155 - 158248636
11482