Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158245817_158247175_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

158245817 - 158247175

Intron Length:

1359

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTCTTTTTAATT

Flanking Amino Acid:

ECHLGECPWQAVLINENGEE

Intron Amino Acid Position:

256

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

75.1

41.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

85.5

0.8

0.7

80.7

24.6

Minor 5ss

37.2

-1.4

3.1

49.5

46.7

Minor BPS

0.74

1.2

78.3

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002945

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003016

158237155 - 158248636

11482