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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158247294_158248088_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158247294 - 158248088
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATGGC
5'SS Class:
major
3'SS Sequence:
CTTTTAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACCCTTTTAATT
Flanking Amino Acid:
NQSKEIKVVVGEVDREKEEQ
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.6
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.8
0.76
0.8
77.6
34.4
Minor 5ss
32.5
-2
3.3
40.6
40.8
Minor BPS
59.7
0.38
1.2
66.47
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002945
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003016
158237155 - 158248636
11482