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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158263462_158265722_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
158263462 - 158265722
Intron Length:
2261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTTGTTCCT
5'SS Class:
weak_major
3'SS Sequence:
TAAAGGAAACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
TGATTAAAAAAA
Flanking Amino Acid:
MAGCFWTILSTYISILS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.3
53.2
43.4
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
46.3
-0.2
1.1
31
40.3
Minor 5ss
34.3
-1.8
3.1
48.4
40.3
Minor BPS
40.5
-0.7
2
52.42
38.6

Associated Gene:

Gene:
PROZ
Ensembl Gene ID:
ENSAPLG00000002834
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002870
158263439 - 158270994
7556