About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158265928_158266415_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158265928 - 158266415
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CCTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TATTTGAGAATT
Flanking Amino Acid:
REVFENDEMLKMFWDNYYGG
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
90.7
0.91
0.6
83.6
31.4
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
45.6
-0.2
2.3
70.62
40.4

Associated Gene:

Gene:
PROZ
Ensembl Gene ID:
ENSAPLG00000002834
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002870
158263439 - 158270994
7556