About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158266441_158267295_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
158266441 - 158267295

Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTAAGCTGG

5'SS Class:
major

3'SS Sequence:
TGTCCCTCCCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ACCTAAT

U12 Branch Point Sequence:
TTCCACCTAATT

Flanking Amino Acid:
MLKMFWDNYYGGQRCSSNPC

Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78
0.66
1.1
61
46.2

Major BPS
73.1
0.57
1
71.9
31.3

Major PPT
74.6
0.55
0.8
65.8
35.9

Minor 5ss
43.7
-0.7
2.9
56.4
47.8

Minor BPS
54
0.2
1.9
75.36
41.2

Associated Gene:

Gene:
PROZ

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

158263439 - 158270994
7556