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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158269728_158269824_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158269728 - 158269824
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTA
5'SS Class:
major
3'SS Sequence:
TGCATTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTTTGCATT
Flanking Amino Acid:
RKRDKHFPWQVLLLNSEGKG
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
74.2
0.55
0.8
72.8
37.3
Minor 5ss
44
-0.7
2.8
59
45.4
Minor BPS
54.5
0.22
1.9
79.72
37

Associated Gene:

Gene:
PROZ
Ensembl Gene ID:
ENSAPLG00000002834
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002870
158263439 - 158270994
7556