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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158273929_158274100_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158273929 - 158274100
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
TCCACCCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTCTTCCACC
Flanking Amino Acid:
MQFAEVTKAVSEGNLLLLND
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61.5
45.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
71
0.47
0.8
61.9
34.7
Minor 5ss
35.1
-1.7
3.4
46.9
48.5
Minor BPS
56.7
0.19
2
72.85
38.3

Associated Gene:

Gene:
PCID2
Ensembl Gene ID:
ENSAPLG00000002544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002590
158272380 - 158282398
10019