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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158274175_158275805_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158274175 - 158275805
Intron Length:
1631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTGACTTTATCC
Flanking Amino Acid:
IYLLPVKMLLGHMPTVQLLK
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
61.6
0.34
1.6
70.76
40.9

Associated Gene:

Gene:
PCID2
Ensembl Gene ID:
ENSAPLG00000002544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002590
158272380 - 158282398
10019