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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158276445_158276567_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158276445 - 158276567
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
VNQLFKIYFKINKLHLCKPL
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
73.9
38
Major BPS
75.1
0.62
1
65.6
41
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
39.9
-1.1
3.6
57.8
47.2
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
PCID2
Ensembl Gene ID:
ENSAPLG00000002544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002590
158272380 - 158282398
10019