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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158278903_158279388_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158278903 - 158279388
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTGCCTTACTT
Flanking Amino Acid:
RAFQAHKEENWALPIMYAVA
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
84.8
0.78
0.8
76.6
37.4
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
64.7
0.54
1.7
80.32
42.1

Associated Gene:

Gene:
PCID2
Ensembl Gene ID:
ENSAPLG00000002544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002590
158272380 - 158282398
10019