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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158279431_158279958_R

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
158279431 - 158279958
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
TCA|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTAAATGCAATAC|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTCCTAAATG
Flanking Amino Acid:
EAYKCQTVIVQSFLRAFQAH
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
31
-1.1
3.3
47.3
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
33.7
-0.9
3.1
39.8
38.6
Minor 5ss
98
1.6
0.7
93.5
17.1
Minor BPS
66.9
0.39
1.8
70.75
43.1

Associated Gene:

Gene:
PCID2
Ensembl Gene ID:
ENSAPLG00000002544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002590
158272380 - 158282398
10019