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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158280025_158280735_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158280025 - 158280735
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
PYDEMFAAHLRCTYAVGNHD
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
87.5
0.84
0.8
84.9
28.4
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
PCID2
Ensembl Gene ID:
ENSAPLG00000002544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002590
158272380 - 158282398
10019