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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158281515_158282362_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158281515 - 158282362
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
TTTCCTTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATGT
Flanking Amino Acid:
HITINQYLQQVQEAIDSRDG
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.3
0.55
1
72.7
37.5
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
54.5
0.22
2.1
79.65
42.1

Associated Gene:

Gene:
PCID2
Ensembl Gene ID:
ENSAPLG00000002544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002590
158272380 - 158282398
10019