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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15828493_15829454_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15828493 - 15829454
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAACAC
5'SS Class:
major
3'SS Sequence:
TCTGTCCAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATGATT
Flanking Amino Acid:
DESHQDTYRQIHIDIPRMSP
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
59.3
40
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
64.7
0.33
1
64.2
37
Minor 5ss
30.2
-2.3
3.4
41.2
45.5
Minor BPS
62
0.46
1.8
85.36
34.5

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865