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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158290207_158291627_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158290207 - 158291627
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
MIMIRSIFLFL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
84
0.76
0.8
81.1
35.5
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
CUL4A
Ensembl Gene ID:
ENSAPLG00000001201
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034357
158283537 - 158317561
34025
ENSAPLT00000001455
158283537 - 158317871
34335