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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15829518_15832326_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15829518 - 15832326
Intron Length:
2809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTTTCTTTAATT
Flanking Amino Acid:
VLRLQPKVTEIFERILFIWA
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.4
0.77
0.8
81.5
35.1
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
84.7
1.17
0.9
92.55
29.6

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865