About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158303108_158305565_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158303108 - 158305565
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATCA
Flanking Amino Acid:
LLQHWSEYIKNFGTTIVVNP
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
59.5
0.29
1.8
74.67
36.6

Associated Gene:

Gene:
CUL4A
Ensembl Gene ID:
ENSAPLG00000001201
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034357
158283537 - 158317561
34025
ENSAPLT00000001455
158283537 - 158317871
34335