Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158307267_158307700_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

158307267 - 158307700

Intron Length:

434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

CATTTCCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

ATTTCATGCATG

Flanking Amino Acid:

KIMIIFRFIHGKDVFEAFYK

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

82.5

29.7

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

76.3

0.59

0.9

70.5

34.9

Minor 5ss

35.3

-1.7

3.1

46.4

Minor BPS

46.4

-0.4

2.2

59.99

41.8

Associated Gene:

Gene:

CUL4A

Ensembl Gene ID:

ENSAPLG00000001201

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034357

158283537 - 158317561

34025

ENSAPLT00000001455

158283537 - 158317871

34335