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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158310634_158311691_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158310634 - 158311691
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
HAVLKAEFKEGKKEFQVSLF
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.6
0.82
0.7
85.6
28.3
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
CUL4A
Ensembl Gene ID:
ENSAPLG00000001201
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001455
158283537 - 158317871
34335
ENSAPLT00000034357
158283537 - 158317561
34025