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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158311798_158316330_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158311798 - 158316330
Intron Length:
4533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
GTACTTTGAACT
Flanking Amino Acid:
FEEIKMATGIEDSELRRTLQ
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
77.9
0.63
0.9
72.2
37
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
57.9
0.33
1.4
71.88
38.5

Associated Gene:

Gene:
CUL4A
Ensembl Gene ID:
ENSAPLG00000001201
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001455
158283537 - 158317871
34335
ENSAPLT00000034357
158283537 - 158317561
34025