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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158317457_158317775_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158317457 - 158317775
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTATCATGAACT
Flanking Amino Acid:
LYNQLKFPVKPGDLKKRIES
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
63.2
0.49
1.8
80.65
40

Associated Gene:

Gene:
CUL4A
Ensembl Gene ID:
ENSAPLG00000001201
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001455
158283537 - 158317871
34335